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DisentangleThings

A blog that reflects my scientific attempts to disentangle health effects of environmental impacts from social and economic forces.

Personal academic website with jekyll 02 Jan 2024
Posted in writing

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Heat and violence 13 May 2023
Posted in heat

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Bushfire Smoke and Mortality in Sydney NSW 17 Dec 2022
Posted in bushfire smoke

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MJA-Lancet Countdown report 2022 30 Oct 2022
Posted in climate change

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Environmental health indicators 30 Jul 2019
Posted in research methods

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Time series regression in R course codes for Chicago Heatwave 04 Jul 2019
Posted in training

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Climate Change policy inaction threatens lives 29 Nov 2018
Posted in climate change air pollution policy relevant research

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IUCN Red List Ecosystems Framework Applicability To Health Impact Assessments 29 Mar 2018
Posted in policy relevant research

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The Australian Air National Environment Protection Measure (NEPM) is about protecting human health 20 Feb 2018
Posted in air pollution policy relevant research

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Filling empty cells in columns with R 31 Dec 2017
Posted in disentangle

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My view of the research data analysis pipeline 07 Dec 2017
Posted in swish

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The impact of scale on associations between disadvantage and hospitalization for heart diseases 29 Nov 2017
Posted in swish

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New paper on neighbourhood level air pollution for health research 16 Nov 2017
Posted in swish

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Reproducible ecosystem risk assessment as virtual desktop case study 03 Jan 2017
Posted in reproducible research pipelines reproducible research reports reproducible research cloud building

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One Health Ecohealth Conference Melbourne Dec 2016 08 Dec 2016
Posted in training

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UPDATE re Ripping data from georeferenced images with QGIS 05 Sep 2016
Posted in drought awap grids data operation

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Ripping data from georeferenced images with QGIS 30 Aug 2016
Posted in drought awap grids data operation

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drought-awap-grids-notes-re-extract-point 27 Aug 2016
Posted in drought awap grids

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colours-to-use-for-maps 03 Aug 2016
Posted in exploratory data analysis

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Australian Postal Areas In Geographical Vs Projected Coordinates 24 Jun 2016
Posted in spatial

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spatial-lag-and-timeseries-model-with-nmmaps-UPDATE 22 May 2016
Posted in spatial dependence

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Judging the evidence part 2 10 May 2016
Posted in bibliometrics and literature reviewing

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R base graphics are fine except barplot 19 Feb 2016
Posted in exploratory data analysis

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r-syntax-highlights-for-my-jekyll-powered-blog.md 14 Feb 2016
Posted in

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Climate grids thredds European data 02 Feb 2016
Posted in disentangle climate data

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The perfect is the enemy of the good 31 Jan 2016
Posted in disentangle writing

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UPDATE to post 'GIS Issues when R is Used for Transforming Coordinate Systems' 29 Jan 2016
Posted in Data Operation spatial

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Release checklist references 28 Jan 2016
Posted in disentangle

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Repeatability vs replication - Definitional variations 25 Jan 2016
Posted in disentangle

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Reproducibility vs replication - Definitional variations 22 Jan 2016
Posted in disentangle

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Validity of measurement 18 Jan 2016
Posted in disentangle statistical modelling

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We have a statistically rigorous and scientifically meaningful definition of replication. Let's use it 12 Jan 2016
Posted in disentangle reproducible research

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Exemplars of distributing data and code - rOpenSci 03 Jan 2016
Posted in disentangle reproducible research pipelines

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My Framework Of Scientific Workflow And Integration Software For Holistic Data Analysis 22 Dec 2015
Posted in

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This is an open notebook but selected content delayed 20 Dec 2015
Posted in disentangle

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Using scholar rankings to provide weights in systematic literature reviews part 1 17 Dec 2015
Posted in disentangle

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My project inventory 07 Dec 2015
Posted in blog home

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show-missingness-in-large-dataframes-with-ggplot-thanks-to-r-blogger 02 Dec 2015
Posted in disentangle

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Notes from Dr Climate Re data reference syntax models for file organisation and naming 29 Nov 2015
Posted in disentangle

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Visualisation tools for communicating data management concepts 26 Nov 2015
Posted in disentangle

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A picture of the newnode function for workflow visualisation in R 17 Nov 2015
Posted in disentangle

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Putting bibtex key into my lit review database needs sanitized latex characters 15 Nov 2015
Posted in disentangle

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Developing a lit review database 14 Nov 2015
Posted in disentangle

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Judging the evidence using a literature review database 13 Nov 2015
Posted in disentangle

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Adopting a bullet point style 12 Nov 2015
Posted in disentangle

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Decisions to make when modelling interactions 31 Oct 2015
Posted in disentangle statistical modelling

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Show missingness in large dataframes, version 2 28 Oct 2015
Posted in disentangle Exploratory Data Analysis

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show-missingness-in-large-dataframes 26 Oct 2015
Posted in disentangle Exploratory Data Analysis

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Sanitize mendeley references in r markdown reporting 24 Oct 2015
Posted in disentangle Reproducible Research Reports

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Keeping an electronic lab notebook for computational statistics projects 23 Oct 2015
Posted in disentangle Workflow tools

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Reproducible research pipelines improve description of method steps 18 Oct 2015
Posted in disentangle Workflow tools

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How To Effectively Implement Electronic Lab Notebooks In Epidemiology 17 Oct 2015
Posted in disentangle Workflow tools

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GIS Issues when R is Used for Transforming Coordinate Systems 16 Oct 2015
Posted in Data Operation spatial

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A Set Of Guidelines For Exploratory Data Analysis And Cleaning 14 Oct 2015
Posted in disentangle

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A Driver Script To Set Up A Data Analysis Pipeline 12 Oct 2015
Posted in disentangle

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Coming To Grips With Citations In Reproducible Research Reports 09 Oct 2015
Posted in disentangle

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A quick review of a quick guide to organizing computational biology projects 07 Oct 2015
Posted in disentangle

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Naming Conventions For Computer Files 05 Oct 2015
Posted in disentangle

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Open Notebook Blogging Vs Twitter? Or Can I Do Both? 04 Oct 2015
Posted in disentangle

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Complexity of Graphs Obfuscates, but Visual Grouping Helps Disentangle Things 03 Oct 2015
Posted in disentangle

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Research Protocol For Manitoba Centre For Health Policy 02 Oct 2015
Posted in disentangle Project Management

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Reproducible Research Pipelines In Epidemiology 01 Oct 2015
Posted in disentangle

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The Best Thing About Reproducibility Is Not Reproducibility, It Is Transparency And Rigour 28 Sep 2015
Posted in disentangle Reproducible Research Reports

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Reproducible Research And Managing Digital Assets Part 3 of 3. ProjectTemplate is appropriate for large scale 27 Sep 2015
Posted in Data Management

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Reproducible Research And Managing Digital Assets Part 2 of 3. makeProject is simple 26 Sep 2015
Posted in Data Management

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Reproducible Research And Managing Digital Assets (1 of 3). Scott Long wrote a book and some great tutorial slides 25 Sep 2015
Posted in disentangle

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Organising Graph Nodes And Edges In A Dataframe 23 Sep 2015
Posted in disentangle

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Open Notebook Science, Jekyll Blogs, Github and Jerry Seinfeld's Secret to Productivity 22 Sep 2015
Posted in disentangle

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My Newnode R Function Useful For Causal Directed Acyclic Graphs (DAGs) 19 Sep 2015
Posted in disentangle

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If You Don't Find A Solution In R, Keep Googling! 17 Sep 2015
Posted in disentangle

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Templates are Needed for Reproducible Research Reports (that Look Good) 16 Sep 2015
Posted in disentangle reproducible research reports

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task-management-like-an-open-science-hacker 13 Sep 2015
Posted in disentangle

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how-to-say-why-before-what 03 Sep 2015
Posted in disentangle

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tracking-a-data-analysis-pipeline 28 Aug 2015
Posted in disentangle

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Web Data, Climate Grids and THREDDS UPDATE 27 Jul 2015
Posted in extreme weather events

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Using the R EML software to mitigate risks in Morpho and Metacat data publishing 19 Mar 2015
Posted in morpho data documentation

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tuftes-gantt-alternative-for-detail-within-context 15 Mar 2015
Posted in project management

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climate-grids-and-thredds-server-experimenting 13 Dec 2014
Posted in extreme weather events

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hotwire-a-morpho-package-using-r-and-xml-editor 21 Aug 2014
Posted in Data Documentation

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morpho-doesnt-respect-quote-encapsulated-strings-in-csv 20 Aug 2014
Posted in Data Documentation

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r-eml-pgis-setting-up-the-software-stack 12 Jul 2014
Posted in disentangle

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data-dictionary-function-needed-further-upgrades-to-my-misc-package 24 Jun 2014
Posted in disentangle

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data-dictionary-function-needed-upgrade-to-my-misc-package 18 Jun 2014
Posted in disentangle

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reflecting-on-aekos-data-portal-test 15 Jun 2014
Posted in Data Documentation

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my-feed-filesize-is-larger-than-512k-need-to-reduce-its-size-in-order-for-feedburner-to-process-it 15 Jun 2014
Posted in Data Documentation

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Testing Aekos Data Portal 14 Jun 2014
Posted in Data Documentation

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releasing-my-misc-r-package-disentangle-version-1 11 Jun 2014
Posted in disentangle

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using-additional-header-rows-for-metadata 17 May 2014
Posted in Data Documentation

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reproducible-research-reports-using-emacs-orgmode-export-to-knitr 17 May 2014
Posted in research methods

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ms-access-to-postgresql-in-64-bit-windows 10 May 2014
Posted in research methods

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cwt-lter-data-submission-template-critique 09 May 2014
Posted in Data Documentation

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morpho-has-an-issue-with-zero-length-strings-as-missing-data 02 May 2014
Posted in Data Documentation

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workaround-for-installing-morpho-on-a-windows-network 29 Apr 2014
Posted in Data Documentation

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using-r-eml-to-input-large-numbers-of-variables-part-2 29 Apr 2014
Posted in Data Documentation

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Tweaking R Eml Package Outputs With Morpho And Failing That With Emacs 25 Apr 2014
Posted in Data Documentation

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Using Reml To Input Large Number Of Column Descriptions 24 Apr 2014
Posted in Data Documentation

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linking-eml-packages-by-umbrella-project-info 21 Apr 2014
Posted in Data Documentation

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Using Morpho for Cataloguing Personal Research Data 20 Apr 2014
Posted in Data Documentation

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A Workaround For Inserting Species Names To Morpho 20 Apr 2014
Posted in Data Documentation

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What is this Open Notebook? And Why Am I Doing It? 19 Apr 2014
Posted in overview

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Project Templates That Initialize A New Project With A Skeleton Automatically 29 Mar 2014
Posted in research methods

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long-term-climatology-contextual-data-for-ecological-research 28 Feb 2014
Posted in extreme weather events Drought

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yearmon-class-and-interoperability-with-excel-and-access 27 Feb 2014
Posted in research methods Data Documentation

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gantting-like-a-hacker 22 Feb 2014
Posted in research methods

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Aggregation Of Statistical Local Areas 18 Feb 2014
Posted in spatial

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Template Reproducible Research with R TEX and Sweave 12 Feb 2014
Posted in research methods

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studygroup-review-of-tree-based-models-for-testing-multiple-working-hypotheses 23 Jan 2014
Posted in research methods overview

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Morpho And R-EML Use Case Marsupial mulgara Dasycercus cristicauda 21 Jan 2014
Posted in Data Documentation

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Github, gh-pages and disqus comments 14 Jan 2014
Posted in research methods

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cwt-lter-data-submission-template-critique 07 Jan 2014
Posted in Data Documentation

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tumbarumba-supersite-dem 03 Jan 2014
Posted in research methods

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extend-Rs-data-frame-class-with-metadata 24 Dec 2013
Posted in research methods

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a-few-best-practices-for-statistical-programming 24 Dec 2013
Posted in research methods

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add-2d-plots-of-trend-and-wiggle-to-catastrophic-regime-shifts-plot 21 Dec 2013
Posted in ecosocial tipping points

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Animation Illustrating Catastrophic Regime Shifts 20 Dec 2013
Posted in ecosocial tipping points

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Marco Fahmi Farewell From ASN-LTERN Data Portal Team 19 Dec 2013
Posted in e-collaboration

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animations-using-R 18 Dec 2013
Posted in research methods

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links-to-useful-data-munging-posts 16 Dec 2013
Posted in research methods Data Documentation

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open-access-journal-templates-for-latex-with-emacs-orgmode 13 Dec 2013
Posted in research methods

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dual-code-repository-and-project-website 09 Dec 2013
Posted in research methods

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bitbucket-has-unlimited-private-git-repositories-for-universities 09 Dec 2013
Posted in research methods

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auto-download-bureau-meteorology-diurnal-data 06 Dec 2013
Posted in extreme weather events

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the-history-of-ons 04 Dec 2013
Posted in research methods

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non-linear-relationships-vs-non-linear-models-vis-a-vis-curvi-linear-terms 03 Dec 2013
Posted in research methods

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research-protocol-we-used-for-our-bushfire-project 02 Dec 2013
Posted in research methods

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Research Protocol For Manitoba Centre For Health Policy 02 Dec 2013
Posted in disentangle Project Management

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graphviz-automagic-flowcharts 01 Dec 2013
Posted in research methods

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Gantt Charts For Health Professionals 01 Dec 2013
Posted in research methods

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sharing-and-extending-research-protocols 27 Nov 2013
Posted in research methods

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our-paper-is-out-heat-health-warning-systems 27 Nov 2013
Posted in extreme weather events

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guest-post-by-marco-fahmi-why-morpho 27 Nov 2013
Posted in research methods

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a-sharp-looking-orgmode-latex-export-header 26 Nov 2013
Posted in research methods

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Setting Up A Workflow Script With Code Chunks 25 Nov 2013
Posted in research methods

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sync-endnote-and-mendeley-references-using-r-xml 20 Nov 2013
Posted in research methods

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git-can-be-simple-or-very-complicated 19 Nov 2013
Posted in research methods

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nectar cloud pumilio build got bogged down 18 Nov 2013
Posted in cloud building

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really-useful-r-upcase-string 17 Nov 2013
Posted in research methods

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pumilio-bushfm-test-dev-prod 15 Nov 2013
Posted in cloud building

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India Part 1. Society for Natal Effects on Health (SNEHA) Suicide Prevention, Chennai India 15 Nov 2013
Posted in research methods

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What Do Scientists Who Write Metadata Use To Do It? And Why? 06 Nov 2013
Posted in Data Documentation

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librarians-and-python 06 Nov 2013
Posted in Data Documentation

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handling-survey-data-with-r 06 Nov 2013
Posted in Data Documentation

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Github And Reproducible Research Report Casestudy Hutchinson Drought Index 06 Nov 2013
Posted in climatic and agricultural drought

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climatic-drought-guestpost-by-luciana-porfirio 01 Nov 2013
Posted in climatic and agricultural drought

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quantum-gis-visualisations 31 Oct 2013
Posted in spatial

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notes-on-spatial-stats-meeting-with-sarunya-sujaritpong 31 Oct 2013
Posted in spatial dependence

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if-disease-incidence-varies-with-age-control-for-it 31 Oct 2013
Posted in research methods

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morpho-and-reml-boilerplate-streamline-the-process-of-metadata-entry 29 Oct 2013
Posted in Data Documentation

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counting-number-of-consecutive-months-in-drought 29 Oct 2013
Posted in climatic and agricultural drought

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spatial-lag-and-timeseries-model-with-nmmaps 28 Oct 2013
Posted in spatial dependence

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Daintree Rainforest Observatory Climate Data from AWAP-GRIDS 26 Oct 2013
Posted in awap grids extreme weather events

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document-first-ask-questions-later 25 Oct 2013
Posted in research methods Data Documentation

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A Great Intro 2 Logistic Regression 18 Oct 2013
Posted in research methods

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spatially-structured-time-series-with-nmmaps 16 Oct 2013
Posted in spatial dependence

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morpho-and-rfigshare 14 Oct 2013
Posted in Data Documentation

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dc-uploader-and-ANU-DataCommons 13 Oct 2013
Posted in Data Documentation

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reml-and-rfigshare-part-2 12 Oct 2013
Posted in Data Documentation

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data-documentation-case-study-reml-and-rfigshare 12 Oct 2013
Posted in Data Documentation

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two-main-types-of-data-documentation-workflow 11 Oct 2013
Posted in Data Documentation

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wickhams-tidy-tools-only-get-you-90-pct-the-way 10 Oct 2013
Posted in research methods

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test-data-for-classification-trees 10 Oct 2013
Posted in Data Documentation

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simple-example-using-nmmaps 10 Oct 2013
Posted in spatial dependence

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reviewing-lessons 05 Oct 2013
Posted in research methods

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spatially-structured-timeseries-vs-spatiotemporal-modelling 26 Sep 2013
Posted in spatial dependence

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reflections-bob-haining-update 25 Sep 2013
Posted in spatial dependence

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workflow-flowcharts-update 23 Sep 2013
Posted in research methods

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introduction-to-ons-theory-and-practice 23 Sep 2013
Posted in research methods

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using-orgmode-and-jekyll-for-open-notebook 22 Sep 2013
Posted in research methods

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toward-a-unified-ecology-dataset 20 Sep 2013
Posted in Data Documentation

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Starting my Open Notebook Science Blog 13 Sep 2013
Posted in research methods

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animated-maps 30 Jul 2013
Posted in spatial

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spatio-temporal-animations 06 Jun 2013
Posted in spatial

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Complex Model Selection (or Data Dredging) 09 May 2013
Posted in spatial dependence

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Pioz et al 2012 model selection 18 Apr 2013
Posted in spatial

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Suicide And Drought Evidence From Literature 17 Apr 2013
Posted in extreme weather events

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Timeseries with Spatial Lag 06 Apr 2013
Posted in spatial dependence

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Reflections on Spatial Regression Class with Prof Bob Haining 05 Apr 2013
Posted in spatial dependence

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software-ism 15 Sep 2012
Posted in research methods

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The Ecological Fallacy is Itself a Fallacy 09 Jul 2012
Posted in research methods

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Centennial Scale Rainfall in Southeastern Australia 05 Jun 2012
Posted in extreme weather events

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How to explain my current research interests? 02 May 2012
Posted in research methods

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Historical GIS evidence of Dengue in the far southeast of Australia? 02 May 2012
Posted in spatial

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Occam's Razor, Einstein's Razor and Chamberlin's Complex Thought 03 Apr 2012
Posted in disentangle things

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The Shane-Weiss-Reich-White.worg approach to Code Management 20 Mar 2012
Posted in disentangle things

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Outlines. A way to organise, and to think 11 Mar 2012
Posted in disentangle things

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Dr Tom Ford disentangles climate change writing 18 Feb 2012
Posted in disentangle things

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The Organisation of Material 06 Feb 2012
Posted in overview

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My Interests 24 Jan 2012
Posted in overview

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About My Research 19 Jan 2012
Posted in overview

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About Me 17 Jan 2012
Posted in research methods

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Progress Report 15 Jan 2012
Posted in overview

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Started a blog with Jekyll 13 Jan 2012
Posted in overview

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Welcome to my Open Notebook

DisentangleThings

A blog that reflects my scientific attempts to disentangle health effects of environmental impacts from social and economic forces.

About

Recent Entries

Categories

Entries grouped by Tags

Welcome to my Open Notebook

DisentangleThings

A blog that reflects my scientific attempts to disentangle health effects of environmental impacts from social and economic forces.

Subscribe

About

Recent Entries

Categories

Entries grouped by Tags